species:   Fugra
pid:       PID0990
parent:    FgmilR-7dps-07
paralog:   
locus:     NC_026474.1:3519343-3519454
matures:   ['UCGCCCUUUGUAGACCAGACCC', 'CCCUCUUCUAUUGGGUGAUC']
srr:       SRR6516243
genome:    /Users/jax/+Genomes/Fungal_genomes/Fugra.GCF_000240135.3_ASM24013v3_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516243.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516243.cram NC_026474.1:3519343-3519454

0 out of bounds
2 alignments
1 proper strand
1 stranded perfect matches

   ************************                                                            **********************   
UCACUUCGCCCUUUGUAGACCAGACCCUCCAUAAUGGACCCUGGAGCAGUGCAGUGCCACAGUAGCUUAGGUAGCGACCCCAGUCCCAACCCUCUUCUAUUGGGUGAUCUGA
(((..((((((...(((((..((....((((...))))..(((..(((......)))..))).......(((.(.(((....))).).)))))..))))).))))))..)))
-----UCGCCCUUUGUAGACCAGACCC------------------------------------------------------------------------------------- l=22 a=0 c
-----------------------------------------------------------------------------------------CCCUCUUCUAUUGGGUGAUC--- l=20 a=0 c*
-------------------------------UAAUGGACCCUGGAGCAGUGCAGU--------------------------------------------------------- l=24 a=1 ma
-----------------------------------------------------------------------------------------CCCUCUUCUAUUGGGUGAUC--- l=20 a=0 ma*

-------------------------------UAAUGGACCCUGGAGCAGUGCAGU--------------------------------------------------------- l=24 a=1 (ma)

mb-00010
ax-1001011
ku-01
ss-110110101000
fn-001
